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14-3-3sigma protein binding to ERalpha-strong peptide (RSH mutation)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5N75
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7
0.19 M CaCl2
5% glycerol
24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.65 53.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.503 α = 90 b = 112.053 β = 90 c = 62.813 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2024-09-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873128 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 66.44 99.8 0.998 14.7 8.6 27278
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 0.898 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 45.685 27234 1361 99.525 0.16 0.1581 0.1723 0.1877 0.1983 RANDOM 14.772
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.759 -0.56 -0.199
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.119 r_dihedral_angle_3_deg 12.338 r_lrange_it 10.364 r_lrange_other 10.327 r_scangle_it 9.125 r_scangle_other 9.122 r_scbond_it 6.661 r_scbond_other 6.658 r_dihedral_angle_1_deg 5.87 r_mcangle_it 4.733
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.119 r_dihedral_angle_3_deg 12.338 r_lrange_it 10.364 r_lrange_other 10.327 r_scangle_it 9.125 r_scangle_other 9.122 r_scbond_it 6.661 r_scbond_other 6.658 r_dihedral_angle_1_deg 5.87 r_mcangle_it 4.733 r_mcangle_other 4.733 r_mcbond_it 3.528 r_mcbond_other 3.508 r_angle_refined_deg 0.867 r_angle_other_deg 0.381 r_nbd_refined 0.205 r_nbtor_refined 0.164 r_symmetry_nbd_other 0.159 r_symmetry_nbd_refined 0.151 r_xyhbond_nbd_refined 0.117 r_nbd_other 0.117 r_symmetry_xyhbond_nbd_refined 0.1 r_metal_ion_refined 0.087 r_symmetry_metal_ion_refined 0.076 r_symmetry_nbtor_other 0.066 r_chiral_restr 0.04 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1913 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing