☰ Navigation Tabs
14-3-3sigma protein binding to ERalpha-strong peptide (RSH mutation) and stabilizer 3'deAc FC-A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JDD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7
0.19 M CaCl2
5% glycerol
24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 3.17 61.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.95 α = 90 b = 151.506 β = 90 c = 75.997 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2024-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.873128 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 76 95.5 0.995 7.7 9.2 18393
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.21 0.51 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 75.997 18360 860 95.332 0.215 0.2131 0.2254 0.2545 0.2647 RANDOM 35.55
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.212 -2.476 -0.736
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.902 r_dihedral_angle_3_deg 14.348 r_lrange_it 6.798 r_lrange_other 6.789 r_dihedral_angle_1_deg 6.225 r_scangle_it 5.411 r_scangle_other 5.409 r_mcangle_other 3.533 r_mcangle_it 3.531 r_scbond_it 3.382
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.902 r_dihedral_angle_3_deg 14.348 r_lrange_it 6.798 r_lrange_other 6.789 r_dihedral_angle_1_deg 6.225 r_scangle_it 5.411 r_scangle_other 5.409 r_mcangle_other 3.533 r_mcangle_it 3.531 r_scbond_it 3.382 r_scbond_other 3.382 r_mcbond_it 2.324 r_mcbond_other 2.324 r_dihedral_angle_2_deg 2.156 r_dihedral_angle_other_2_deg 1.247 r_angle_refined_deg 1.218 r_angle_other_deg 0.446 r_nbd_refined 0.216 r_symmetry_xyhbond_nbd_refined 0.212 r_xyhbond_nbd_refined 0.205 r_nbtor_refined 0.168 r_symmetry_nbd_other 0.163 r_nbd_other 0.102 r_symmetry_nbd_refined 0.094 r_symmetry_nbtor_other 0.07 r_chiral_restr 0.051 r_symmetry_xyhbond_nbd_other 0.016 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1857 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling MOLREP phasing