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14-3-3sigma protein binding to ERalpha-strong peptide (RSH mutation)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7
0.19 M CaCl2
5% glycerol
24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.67 53.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.241 α = 90 b = 112.493 β = 90 c = 62.853 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2024-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.873128 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 66.39 100 0.999 22.5 12.2 46995
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 0.976 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 56.31 46962 2357 99.951 0.129 0.1274 0.1293 0.1545 0.1576 RANDOM 18.828
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.384 -0.759 -1.625
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.479 r_lrange_it 14.654 r_dihedral_angle_3_deg 13.615 r_lrange_other 13.472 r_scangle_it 10.933 r_scangle_other 10.929 r_scbond_it 7.797 r_scbond_other 7.789 r_mcangle_it 6.635 r_mcangle_other 6.635
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.479 r_lrange_it 14.654 r_dihedral_angle_3_deg 13.615 r_lrange_other 13.472 r_scangle_it 10.933 r_scangle_other 10.929 r_scbond_it 7.797 r_scbond_other 7.789 r_mcangle_it 6.635 r_mcangle_other 6.635 r_dihedral_angle_1_deg 6.316 r_mcbond_it 4.674 r_mcbond_other 4.667 r_rigid_bond_restr 3.549 r_angle_refined_deg 1.402 r_angle_other_deg 0.59 r_xyhbond_nbd_refined 0.241 r_nbd_refined 0.237 r_symmetry_xyhbond_nbd_refined 0.212 r_metal_ion_refined 0.188 r_symmetry_nbd_refined 0.186 r_symmetry_metal_ion_refined 0.183 r_nbtor_refined 0.181 r_symmetry_nbd_other 0.17 r_nbd_other 0.152 r_chiral_restr 0.081 r_symmetry_nbtor_other 0.069 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1903 Nucleic Acid Atoms Solvent Atoms 271 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling MOLREP phasing