30EW | pdb_000030ew

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
in silico model	AlphaFold

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	277	MgSO4, MES pH 6.5, Ethylene glycol, PEG 400

Crystal Properties
Matthews coefficient	Solvent content
2.62	53.01

Symmetry
Space Group	P 1 21 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2023-10-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.1	0.9763	BESSY	14.1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.69	48.438	98.7	0.108	0.117	0.044	0.998	9.5	7		243960

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.7	1.79	98.2		1.963	0.726	0.403	1.1	7.1

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Free (Depositor)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.699	48.438	243914	12294	98.601	0.195	0.1931	0.2307	28.731

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.78		0.07	2.191		-1.056

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.105
r_dihedral_angle_4_deg	19.55
r_dihedral_angle_3_deg	12.683
r_dihedral_angle_1_deg	7.711
r_lrange_it	5.823
r_lrange_other	5.823
r_scangle_it	4.374
r_scangle_other	4.373
r_scbond_it	3.001
r_scbond_other	3.001

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.105
r_dihedral_angle_4_deg	19.55
r_dihedral_angle_3_deg	12.683
r_dihedral_angle_1_deg	7.711
r_lrange_it	5.823
r_lrange_other	5.823
r_scangle_it	4.374
r_scangle_other	4.373
r_scbond_it	3.001
r_scbond_other	3.001
r_mcangle_it	2.804
r_mcangle_other	2.804
r_mcbond_it	2.078
r_mcbond_other	2.076
r_angle_refined_deg	1.565
r_angle_other_deg	1.305
r_nbd_refined	0.196
r_nbd_other	0.187
r_symmetry_nbd_other	0.175
r_nbtor_refined	0.166
r_xyhbond_nbd_refined	0.137
r_symmetry_nbd_refined	0.136
r_symmetry_xyhbond_nbd_refined	0.123
r_metal_ion_refined	0.109
r_symmetry_nbtor_other	0.076
r_chiral_restr	0.068
r_bond_refined_d	0.009
r_gen_planes_refined	0.008
r_symmetry_xyhbond_nbd_other	0.002
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	15293
Nucleic Acid Atoms
Solvent Atoms	1444
Heterogen Atoms	498

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.