2ZEW

Family 16 Cabohydrate Binding Domain Module 1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72983M sodium formate, 15% ethylene glycol, pH7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
2.754.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.425α = 90
b = 77.763β = 90
c = 77.935γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42006-12-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-IDAPS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.45097.80.04629.55.867647
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.41.4587.70.4082.93.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.42064126342597.680.177910.17690.19674RANDOM21.372
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.830.490.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.347
r_dihedral_angle_3_deg10.787
r_dihedral_angle_1_deg7.078
r_sphericity_free3.706
r_sphericity_bonded3.167
r_scangle_it3.115
r_scbond_it2.398
r_mcangle_it1.708
r_rigid_bond_restr1.637
r_angle_refined_deg1.251
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.347
r_dihedral_angle_3_deg10.787
r_dihedral_angle_1_deg7.078
r_sphericity_free3.706
r_sphericity_bonded3.167
r_scangle_it3.115
r_scbond_it2.398
r_mcangle_it1.708
r_rigid_bond_restr1.637
r_angle_refined_deg1.251
r_mcbond_it1.084
r_nbtor_refined0.307
r_symmetry_hbond_refined0.239
r_nbd_refined0.208
r_symmetry_vdw_refined0.166
r_xyhbond_nbd_refined0.156
r_chiral_restr0.09
r_metal_ion_refined0.088
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_mcbond_other
r_bond_other_d
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_nbtor_other
r_symmetry_vdw_other
r_nbd_other
r_gen_planes_other
r_metal_ion_other
r_dihedral_angle_4_deg
r_angle_other_deg
r_xyhbond_nbd_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2290
Nucleic Acid Atoms
Solvent Atoms341
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing