X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP62890.2M sodium malonate pH 6.0, 13%-15% PEG 3350, vapor diffusion, hanging drop, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
2.1342.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.36α = 90
b = 70.36β = 90
c = 226.92γ = 90
Symmetry
Space GroupP 43

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMarMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7A0.9875EMBL/DESY, HAMBURGBW7A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.52037598
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.520

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.5153562018741000.212510.209380.27226RANDOM47.23
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.451.45-2.89
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.385
r_dihedral_angle_3_deg21.601
r_dihedral_angle_4_deg19.468
r_dihedral_angle_1_deg14.152
r_scangle_it3.42
r_angle_refined_deg2.448
r_scbond_it2.182
r_mcangle_it1.256
r_mcbond_it0.791
r_xyhbond_nbd_refined0.385
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.385
r_dihedral_angle_3_deg21.601
r_dihedral_angle_4_deg19.468
r_dihedral_angle_1_deg14.152
r_scangle_it3.42
r_angle_refined_deg2.448
r_scbond_it2.182
r_mcangle_it1.256
r_mcbond_it0.791
r_xyhbond_nbd_refined0.385
r_nbtor_refined0.32
r_symmetry_vdw_refined0.308
r_nbd_refined0.271
r_chiral_restr0.187
r_symmetry_hbond_refined0.169
r_bond_refined_d0.034
r_gen_planes_refined0.012
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7808
Nucleic Acid Atoms
Solvent Atoms16
Heterogen Atoms28

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction