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Complex of Transportin 1 with JKTBP NLS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QBK PDB ENTRY 1QBK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 293 0.1M Tris-HCl pH 8.6, 14% (w/v) PEG 8000, 0.1M NaH2PO4, 0.015mM Phenol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.76 67.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.306 α = 90 b = 169.805 β = 90 c = 68.458 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50 94.9 0.071 13.2 25190 23669
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.31 82.8 0.434 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QBK 3.2 47.57 23669 1265 94.95 0.23765 0.23551 0.2289 0.27859 0.2241 RANDOM 129.703
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -10.35 15.29 -4.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.253 r_dihedral_angle_3_deg 18.72 r_dihedral_angle_4_deg 18.174 r_dihedral_angle_1_deg 4.569 r_angle_refined_deg 1.112 r_scangle_it 0.858 r_mcangle_it 0.512 r_scbond_it 0.496 r_nbtor_refined 0.302 r_mcbond_it 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.253 r_dihedral_angle_3_deg 18.72 r_dihedral_angle_4_deg 18.174 r_dihedral_angle_1_deg 4.569 r_angle_refined_deg 1.112 r_scangle_it 0.858 r_mcangle_it 0.512 r_scbond_it 0.496 r_nbtor_refined 0.302 r_mcbond_it 0.28 r_nbd_refined 0.218 r_symmetry_vdw_refined 0.173 r_xyhbond_nbd_refined 0.134 r_chiral_restr 0.08 r_symmetry_hbond_refined 0.07 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6689 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing