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Complex of Transportin 1 with TAP NLS, crystal form 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z5O PDB ENTRY 2Z5O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.8 293 100mM Tris-HCl pH 8.8, 16-18% (w/v) PEG 8000, 0.1M NaH2PO4, 0.1M KCl, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.69 66.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.442 α = 90 b = 170.986 β = 90 c = 68.34 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.0000 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 95.2 0.058 14.9 31175 28901
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3 3.11 71.8 0.402 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2Z5O 3 50 28901 1532 95.35 0.24899 0.24797 0.2396 0.26741 0.2596 RANDOM 94.159
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.85 6.24 -2.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.342 r_dihedral_angle_3_deg 19.279 r_dihedral_angle_4_deg 16.36 r_dihedral_angle_1_deg 4.449 r_scangle_it 1.661 r_scbond_it 1.21 r_angle_refined_deg 1.113 r_mcangle_it 0.938 r_mcbond_it 0.642 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.342 r_dihedral_angle_3_deg 19.279 r_dihedral_angle_4_deg 16.36 r_dihedral_angle_1_deg 4.449 r_scangle_it 1.661 r_scbond_it 1.21 r_angle_refined_deg 1.113 r_mcangle_it 0.938 r_mcbond_it 0.642 r_nbtor_refined 0.305 r_nbd_refined 0.223 r_symmetry_vdw_refined 0.211 r_symmetry_hbond_refined 0.138 r_xyhbond_nbd_refined 0.117 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6778 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SERGUI data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing