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STRUCTURE OF THE COMPLEX BETWEEN Dock2 AND Rac1.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GAF CHAIN A OF PDB ENTRY 1GAF AND CHAIN A OF PDB ENTRY 1MH1 experimental model PDB 1MH1 CHAIN A OF PDB ENTRY 1GAF AND CHAIN A OF PDB ENTRY 1MH1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 293 0.1 M MES PH 6.5, 12% (W/V) PEG 3350, 10% (V/V) GLYCEROL AND 150 MM NACL. AT 20 C
Crystal Properties Matthews coefficient Solvent content 3.04 59.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.51 α = 90 b = 98.61 β = 99.64 c = 130.13 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2010-01-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 78.18 93.2 0.08 8.7 2.6 43702 1.4 63.41
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 90.1 0.61 1.5 2.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT CHAIN A OF PDB ENTRY 1GAF AND CHAIN A OF PDB ENTRY 1MH1 2.7 64.374 1.35 43654 2217 92.71 0.2059 0.2033 0.201 0.2548 0.2521 68.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.166 2.166 7.2882 -16.4542
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.101 f_angle_d 1.439 f_chiral_restr 0.101 f_bond_d 0.014 f_plane_restr 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9525 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement MOSFLM data reduction SCALA data scaling PHASER phasing