2XLC

Acetyl xylan esterase from Bacillus pumilus CECT5072 bound to paraoxon


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.50.2 M NH4 ACETATE, 0.1 M BIS-TRIS PH 5.5, 45% 2-METHYL-2,4-PENTANEDIOL (MPD)
Crystal Properties
Matthews coefficientSolvent content
2.2545

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.049α = 90
b = 116.052β = 105.6
c = 100.248γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2008-07-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM16ESRFBM16

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.72099.60.17.144695854.137
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.8599.60.421.83.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1ODS2.72046958250799.620.217310.216310.23608RANDOM20.763
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.90.73-0.02-3.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.924
r_dihedral_angle_4_deg19.436
r_dihedral_angle_3_deg14.392
r_dihedral_angle_1_deg3.892
r_scangle_it0.697
r_angle_refined_deg0.635
r_scbond_it0.424
r_mcangle_it0.314
r_mcbond_it0.162
r_chiral_restr0.047
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.924
r_dihedral_angle_4_deg19.436
r_dihedral_angle_3_deg14.392
r_dihedral_angle_1_deg3.892
r_scangle_it0.697
r_angle_refined_deg0.635
r_scbond_it0.424
r_mcangle_it0.314
r_mcbond_it0.162
r_chiral_restr0.047
r_bond_refined_d0.003
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms14506
Nucleic Acid Atoms
Solvent Atoms40
Heterogen Atoms48

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing