2XGA

MTSL spin-labelled Shigella Flexneri Spa15


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16100 MM GUANIDINIUM CHLORIDE, 100 MM MES PH 6.0, 50 MM AMMONIUM SULPHATE, 5% ETHYLENE GLYCOL
Crystal Properties
Matthews coefficientSolvent content
2.0941

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.98α = 90
b = 50.38β = 117.03
c = 57.68γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120CCDADSC QUANTUM 315KIRKPATRICK BAEZ BIMORPH MIRROR PAIR FOR HORIZONTAL AND VERTICAL FOCUSSING2009-11-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I02DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1251.3898.70.174.43.51926617.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.1198.70.7323.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1RY92.351.381203665098.280.225740.223690.26375RANDOM21.956
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.780.53-1.240.94
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.095
r_dihedral_angle_4_deg15.338
r_dihedral_angle_3_deg12.971
r_dihedral_angle_1_deg6.99
r_angle_refined_deg1.284
r_angle_other_deg0.896
r_symmetry_vdw_other0.281
r_symmetry_vdw_refined0.213
r_symmetry_hbond_refined0.208
r_xyhbond_nbd_refined0.159
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.095
r_dihedral_angle_4_deg15.338
r_dihedral_angle_3_deg12.971
r_dihedral_angle_1_deg6.99
r_angle_refined_deg1.284
r_angle_other_deg0.896
r_symmetry_vdw_other0.281
r_symmetry_vdw_refined0.213
r_symmetry_hbond_refined0.208
r_xyhbond_nbd_refined0.159
r_chiral_restr0.07
r_mcbond_it0.012
r_bond_refined_d0.008
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_it
r_mcangle_other
r_scbond_it
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2038
Nucleic Acid Atoms
Solvent Atoms80
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing