2WM3

Crystal structure of NmrA-like family domain containing protein 1 in complex with niflumic acid


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
12.1M SODIUM MALATE PH 7.0
Crystal Properties
Matthews coefficientSolvent content
3.2662.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.712α = 90
b = 68.712β = 90
c = 183.789γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2008-06-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8555.0597.80.1211.66386762
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.9990.824.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.855036707193499.910.167340.165790.19709RANDOM10.514
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.430.43-0.86
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.094
r_dihedral_angle_4_deg15.415
r_dihedral_angle_3_deg12.85
r_dihedral_angle_1_deg6.125
r_scangle_it4.152
r_scbond_it2.612
r_angle_refined_deg2.116
r_mcangle_it1.552
r_angle_other_deg0.939
r_mcbond_it0.862
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.094
r_dihedral_angle_4_deg15.415
r_dihedral_angle_3_deg12.85
r_dihedral_angle_1_deg6.125
r_scangle_it4.152
r_scbond_it2.612
r_angle_refined_deg2.116
r_mcangle_it1.552
r_angle_other_deg0.939
r_mcbond_it0.862
r_mcbond_other0.268
r_chiral_restr0.094
r_bond_refined_d0.017
r_gen_planes_refined0.008
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2290
Nucleic Acid Atoms
Solvent Atoms269
Heterogen Atoms100

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing