2WIQ

Fluorescent protein KillerRed in the native state


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION8.52931.8M AMMONIUM SULFATE, 0.1M TRIS PH 8.5, 0.05M ASCORBIC ACID, VAPOR DIFFUSION, TEMPERATURE 293K
Crystal Properties
Matthews coefficientSolvent content
1.8934.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.49α = 90
b = 73.67β = 90
c = 80.26γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2008-09-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125099.70.1514.74.829194-328.164
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0599.70.583.34.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1GFL254.3127682147899.790.173820.170610.23564RANDOM22.623
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.09-0.330.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.331
r_dihedral_angle_4_deg21.907
r_dihedral_angle_3_deg16.67
r_dihedral_angle_1_deg7.112
r_scangle_it4.378
r_scbond_it2.913
r_angle_refined_deg1.882
r_mcangle_it1.864
r_mcbond_it1.036
r_symmetry_hbond_refined0.321
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.331
r_dihedral_angle_4_deg21.907
r_dihedral_angle_3_deg16.67
r_dihedral_angle_1_deg7.112
r_scangle_it4.378
r_scbond_it2.913
r_angle_refined_deg1.882
r_mcangle_it1.864
r_mcbond_it1.036
r_symmetry_hbond_refined0.321
r_nbtor_refined0.309
r_symmetry_vdw_refined0.305
r_xyhbond_nbd_refined0.239
r_nbd_refined0.225
r_chiral_restr0.137
r_bond_refined_d0.018
r_gen_planes_refined0.008
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3593
Nucleic Acid Atoms
Solvent Atoms269
Heterogen Atoms17

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing