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Fluorescent protein KillerRed in the native state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GFL PDB ENTRY 1GFL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 293 1.8M AMMONIUM SULFATE, 0.1M TRIS PH 8.5, 0.05M ASCORBIC ACID, VAPOR DIFFUSION, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 1.89 34.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.49 α = 90 b = 73.67 β = 90 c = 80.26 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.7 0.15 14.7 4.8 29194 -3 28.164
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 99.7 0.58 3.3 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GFL 2 54.31 27682 1478 99.79 0.17382 0.17061 0.1725 0.23564 0.2363 RANDOM 22.623
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.33 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.331 r_dihedral_angle_4_deg 21.907 r_dihedral_angle_3_deg 16.67 r_dihedral_angle_1_deg 7.112 r_scangle_it 4.378 r_scbond_it 2.913 r_angle_refined_deg 1.882 r_mcangle_it 1.864 r_mcbond_it 1.036 r_symmetry_hbond_refined 0.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.331 r_dihedral_angle_4_deg 21.907 r_dihedral_angle_3_deg 16.67 r_dihedral_angle_1_deg 7.112 r_scangle_it 4.378 r_scbond_it 2.913 r_angle_refined_deg 1.882 r_mcangle_it 1.864 r_mcbond_it 1.036 r_symmetry_hbond_refined 0.321 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.305 r_xyhbond_nbd_refined 0.239 r_nbd_refined 0.225 r_chiral_restr 0.137 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3593 Nucleic Acid Atoms Solvent Atoms 269 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing