2WG6

Proteasome-Activating Nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN4, P61A Mutant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1100 MM TRIS PH 8.6, 1 M NH4H2PO4, 25% PEG 200
Crystal Properties
Matthews coefficientSolvent content
2.8456.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.35α = 90
b = 91.38β = 119.97
c = 103.36γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.534.2499.30.0516.914.2557981
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.6598.40.762.034.21

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2WG52.534.245508228991000.197540.196240.22242RANDOM47.431
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.75-0.550.97-0.77
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.248
r_dihedral_angle_4_deg20.771
r_dihedral_angle_3_deg17.012
r_scangle_it10.521
r_scbond_it7.545
r_dihedral_angle_1_deg6.539
r_mcangle_it4.87
r_mcbond_it3.606
r_angle_refined_deg1.689
r_angle_other_deg0.943
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.248
r_dihedral_angle_4_deg20.771
r_dihedral_angle_3_deg17.012
r_scangle_it10.521
r_scbond_it7.545
r_dihedral_angle_1_deg6.539
r_mcangle_it4.87
r_mcbond_it3.606
r_angle_refined_deg1.689
r_angle_other_deg0.943
r_nbd_refined0.228
r_nbd_other0.197
r_nbtor_refined0.185
r_symmetry_vdw_other0.158
r_xyhbond_nbd_refined0.157
r_mcbond_other0.152
r_nbtor_other0.09
r_chiral_restr0.087
r_symmetry_hbond_refined0.087
r_bond_refined_d0.018
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7988
Nucleic Acid Atoms
Solvent Atoms211
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing