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Rabbit-muscle G-actin in complex with myxobacterial rhizopodin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1J6Z PDB ENTRY 1J6Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.6 100 MM MES PH 6.6 14% (W/W) PEG1500 12% (W/W) 1,6-HEXANEDIOL 100 MM CACL2 1 MM DTT 10 MM BETAINE-HYDROCHLORIDE
Crystal Properties Matthews coefficient Solvent content 2.37 48.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.653 α = 90 b = 194.863 β = 90 c = 53.038 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 99.8 0.05 28.4 8 985534 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.5 99.5 0.55 3.5 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1J6Z 2.35 19.41 32589 1760 100 0.189 0.186 0.2728 0.241 0.3063 RANDOM 46.01
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 0.01 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.748 r_dihedral_angle_4_deg 14.892 r_dihedral_angle_3_deg 12.024 r_scangle_it 3.406 r_dihedral_angle_1_deg 3.297 r_mcangle_it 3.267 r_scbond_it 2.468 r_mcbond_it 2.394 r_angle_refined_deg 1.709 r_angle_other_deg 1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.748 r_dihedral_angle_4_deg 14.892 r_dihedral_angle_3_deg 12.024 r_scangle_it 3.406 r_dihedral_angle_1_deg 3.297 r_mcangle_it 3.267 r_scbond_it 2.468 r_mcbond_it 2.394 r_angle_refined_deg 1.709 r_angle_other_deg 1.03 r_symmetry_vdw_refined 0.319 r_xyhbond_nbd_refined 0.238 r_symmetry_vdw_other 0.228 r_symmetry_hbond_refined 0.217 r_nbd_refined 0.202 r_nbd_other 0.192 r_nbtor_refined 0.176 r_chiral_restr 0.11 r_nbtor_other 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5383 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms 194
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing