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The crystal structure of chlorite dismutase: a detox enzyme producing molecular oxygen
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 100 MM MES PH 5.5, 25 %(W/V) PEG MME 2000, 0.3 M KSCN, 5 %(V/V) GLYCEROL, 180 MM AMMONIUM SULPHATE
Crystal Properties Matthews coefficient Solvent content 2.54 51.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 164.458 α = 90 b = 169.335 β = 90 c = 60.792 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-06-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.98340, 1.73990, 1.73820 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 40.13 100 0.11 13.8 100003 26.559
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 100 0.41 3.8 14.09
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.1 50.68 94936 4994 99.97 0.2205 0.2187 0.2176 0.25486 0.2534 RANDOM 26.167
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.92 -0.88 1.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.736 r_dihedral_angle_4_deg 22.006 r_dihedral_angle_3_deg 16.265 r_dihedral_angle_1_deg 5.744 r_scangle_it 2.717 r_scbond_it 1.631 r_angle_refined_deg 1.298 r_mcangle_it 1.178 r_mcbond_it 0.607 r_symmetry_vdw_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.736 r_dihedral_angle_4_deg 22.006 r_dihedral_angle_3_deg 16.265 r_dihedral_angle_1_deg 5.744 r_scangle_it 2.717 r_scbond_it 1.631 r_angle_refined_deg 1.298 r_mcangle_it 1.178 r_mcbond_it 0.607 r_symmetry_vdw_refined 0.305 r_nbtor_refined 0.3 r_nbd_refined 0.225 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.095 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10939 Nucleic Acid Atoms Solvent Atoms 555 Heterogen Atoms 296
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling CRANK phasing