X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.6% PEG 4000, 0.07M SODIUM ACETATE, 30% GLYCEROL
Crystal Properties
Matthews coefficientSolvent content
358.67

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 106.988α = 90
b = 70.587β = 119.75
c = 106.848γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.9, 1.5414SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
122595.40.0614.93.6873512
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1272.50.4512.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUTNONE2.0525.7679135417895.40.1890.1870.228RANDOM46.1
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.010.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.678
r_dihedral_angle_1_deg31.462
r_dihedral_angle_4_deg17.853
r_dihedral_angle_3_deg14.597
r_scangle_it3.47
r_scbond_it2.226
r_mcangle_it2.092
r_angle_refined_deg1.384
r_mcbond_it1.188
r_nbd_other0.555
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.678
r_dihedral_angle_1_deg31.462
r_dihedral_angle_4_deg17.853
r_dihedral_angle_3_deg14.597
r_scangle_it3.47
r_scbond_it2.226
r_mcangle_it2.092
r_angle_refined_deg1.384
r_mcbond_it1.188
r_nbd_other0.555
r_angle_other_deg0.53
r_nbtor_refined0.306
r_chiral_restr0.248
r_symmetry_hbond_refined0.239
r_xyhbond_nbd_refined0.227
r_symmetry_vdw_refined0.217
r_nbd_refined0.214
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.003
r_gen_planes_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4490
Nucleic Acid Atoms3057
Solvent Atoms610
Heterogen Atoms7

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SHARPphasing