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Methylated Shigella flexneri MxiC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VIX PDB ENTRY 2VIX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 1.0 M SUCCINIC ACID, 0.1 M HEPES PH 7.0, 1% W/V PEGMME 2000
Crystal Properties Matthews coefficient Solvent content 3.24 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.48 α = 90 b = 83.45 β = 90 c = 117.07 γ = 90
Symmetry Space Group P 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 CCD ADSC CCD 2007-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 42 99.4 0.07 14.2 3.5 28754 59.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 99.9 0.52 2.7 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2VIX 2.5 42 23449 1259 0.214 0.211 0.211 0.2321 0.265 0.2875 0.214
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_angle_deg 0.935 t_it 0.805 t_gen_planes 0.02 t_nbd 0.019 t_bond_d 0.006 t_trig_c_planes 0.003 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_omega_torsion
RMS Deviations Key Refinement Restraint Deviation t_angle_deg 0.935 t_it 0.805 t_gen_planes 0.02 t_nbd 0.019 t_bond_d 0.006 t_trig_c_planes 0.003 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_omega_torsion t_other_torsion t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4776 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms
Software Software Software Name Purpose TNT refinement MOSFLM data reduction SCALA data scaling PHASER phasing