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Structure of human serum albumin with S-naproxen and the GA module
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E7E PDB ENTRIES 1E7E AND 1TF0 experimental model PDB 1TF0 PDB ENTRIES 1E7E AND 1TF0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 26-32% PEG 3350, 50 MM POTASSIUM PHOSPHATE, 0.1 M AMMONIUM PHOSPHATE/POTASSIUM PHOSPHATE
Crystal Properties Matthews coefficient Solvent content 2.52 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 190.507 α = 90 b = 49.462 β = 93 c = 79.933 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2006-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 80.32 99 0.14 12.22 6.33 24847 3.7 58.71
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.52 98.3 0.36 1.95 3.69
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1E7E AND 1TF0 2.52 94.92 24846 1273 96.7 0.236 0.234 0.2238 0.28 0.2626 RANDOM 57.55
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.891 0.198 2.076 -0.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.133 r_dihedral_angle_4_deg 19.905 r_dihedral_angle_3_deg 17.692 r_dihedral_angle_1_deg 6.058 r_mcangle_it 1.385 r_angle_refined_deg 1.371 r_scangle_it 1.277 r_scbond_it 0.865 r_mcbond_it 0.863 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.133 r_dihedral_angle_4_deg 19.905 r_dihedral_angle_3_deg 17.692 r_dihedral_angle_1_deg 6.058 r_mcangle_it 1.385 r_angle_refined_deg 1.371 r_scangle_it 1.277 r_scbond_it 0.865 r_mcbond_it 0.863 r_nbtor_refined 0.32 r_nbd_refined 0.265 r_symmetry_vdw_refined 0.255 r_xyhbond_nbd_refined 0.199 r_chiral_restr 0.094 r_symmetry_hbond_refined 0.033 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4783 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 89
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling TRUNCATE data scaling MOLREP phasing