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Crystal Structure of a Family 6 Carbohydrate-Binding Module from Clostridium cellulolyticum in complex with xylose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GMM PDB ENTRY 1GMM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20% PEG 3350, 0.1M NAOAC, 0.1M NACITRATE.2H20 PH 5.8
Crystal Properties Matthews coefficient Solvent content 1.97 36.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.026 α = 90 b = 43.598 β = 90 c = 93.323 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113.15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 93.25 99.6 0.06 13.1 4.37 20980 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 99.9 0.33 3.6 3.67
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GMM 1.5 93.25 19900 1078 99.6 0.192 0.19 0.1894 0.222 0.2213 RANDOM 11.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 0.22 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.414 r_dihedral_angle_4_deg 21.514 r_dihedral_angle_3_deg 10.651 r_dihedral_angle_1_deg 6.399 r_scangle_it 3.292 r_scbond_it 2.234 r_angle_refined_deg 1.587 r_mcangle_it 1.406 r_mcbond_it 0.846 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.414 r_dihedral_angle_4_deg 21.514 r_dihedral_angle_3_deg 10.651 r_dihedral_angle_1_deg 6.399 r_scangle_it 3.292 r_scbond_it 2.234 r_angle_refined_deg 1.587 r_mcangle_it 1.406 r_mcbond_it 0.846 r_nbtor_refined 0.306 r_nbd_refined 0.226 r_symmetry_vdw_refined 0.199 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.129 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 966 Nucleic Acid Atoms Solvent Atoms 162 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement