2V4V | pdb_00002v4v

Crystal Structure of a Family 6 Carbohydrate-Binding Module from Clostridium cellulolyticum in complex with xylose

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2v4va_	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	automated matches	automated matches	(Ruminiclostridium cellulolyticum ) [TaxId: 1521 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Family 6 carbohydrate binding module, cbm6	8061822	4003021	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	galactose-binding domain-like	8061823	3000087	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CBM_6	e2v4vA1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: CBM_6	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03422	Carbohydrate binding module (family 6) (CBM_6)	Carbohydrate binding module (family 6)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	GH59 GALACTOSIDASE	binding carbohydrate binding hydrolase activity, acting on glycosyl bonds glycosylceramidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity galactosylceramidase activity catalytic activity cellulase activity	sphingolipid catabolic process catabolic process glycolipid metabolic process carbohydrate derivative metabolic process galactolipid catabolic process ceramide catabolic process amide metabolic process glycosylceramide metabolic process galactolipid metabolic process membrane lipid metabolic process ceramide metabolic process carbohydrate derivative catabolic process lipid catabolic process glycosphingolipid catabolic process sphingolipid catabolic process catabolic process glycolipid metabolic process carbohydrate derivative metabolic process galactolipid catabolic process ceramide catabolic process amide metabolic process glycosylceramide metabolic process galactolipid metabolic process membrane lipid metabolic process ceramide metabolic process carbohydrate derivative catabolic process lipid catabolic process glycosphingolipid catabolic process glycosphingolipid metabolic process galactosylceramide catabolic process liposaccharide metabolic process primary metabolic process sphingolipid metabolic process membrane lipid catabolic process glycosylceramide catabolic process glycolipid catabolic process metabolic process cellular process galactosylceramide metabolic process lipid metabolic process carbohydrate metabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process cellulose catabolic process macromolecule metabolic process cellulose metabolic process	cellular anatomical structure membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle lytic vacuole vacuole cytoplasm intracellular membrane-bounded organelle lysosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR002105	Dockerin type I repeat	Repeat
A	IPR049161	Glycosyl hydrolase family 59, catalytic domain	Domain
A	IPR016134	Dockerin domain	Domain
A	IPR006584	Cellulose binding, type IV	Domain
A	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A	IPR049162	Glycosyl hydrolase family 59, C-terminal lectin domain	Domain
A	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A	IPR005084	Carbohydrate binding module family 6	Domain
A	IPR001286	Glycoside hydrolase, family 59	Family
A	IPR036439	Dockerin domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.