X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7PEG6000, AMMONIUM CHROLIDE, HEPES, PH 7.0, VAPOR DIFFUSION
Crystal Properties
Matthews coefficientSolvent content
359

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 151.781α = 90
b = 64.146β = 94.7
c = 68.018γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMIRRORS2004-03-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL40B2SPring-8BL40B2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0520930.0513.674.5134455
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.052.1564.10.42.471.96

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1OM22.052034455363593.10.2540.2480.308RANDOM41.89
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.12.491.830.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.284
r_dihedral_angle_3_deg18.03
r_dihedral_angle_4_deg17.206
r_dihedral_angle_1_deg5.392
r_scangle_it2.142
r_scbond_it1.494
r_angle_refined_deg1.226
r_mcangle_it0.934
r_angle_other_deg0.923
r_mcbond_it0.844
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.284
r_dihedral_angle_3_deg18.03
r_dihedral_angle_4_deg17.206
r_dihedral_angle_1_deg5.392
r_scangle_it2.142
r_scbond_it1.494
r_angle_refined_deg1.226
r_mcangle_it0.934
r_angle_other_deg0.923
r_mcbond_it0.844
r_symmetry_hbond_refined0.234
r_nbd_refined0.212
r_xyhbond_nbd_refined0.203
r_nbd_other0.179
r_nbtor_refined0.171
r_symmetry_vdw_other0.17
r_symmetry_vdw_refined0.103
r_nbtor_other0.096
r_chiral_restr0.069
r_bond_refined_d0.01
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3855
Nucleic Acid Atoms
Solvent Atoms377
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing