2V1O

Crystal structure of N-terminal domain of acyl-CoA thioesterase 7


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
10.2 M SODIUM POTASSIUM TARTRATE, 15% PEG 2000 MONO METHYL ETHER
Crystal Properties
Matthews coefficientSolvent content
2.652

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.741α = 90
b = 125.531β = 95.39
c = 81.78γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298IMAGE PLATERIGAKU R-AXIS IVMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7829.2895.50.0513.85.871013442
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.781.8576.30.363.75.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.7829.2996252509195.50.2120.210.244RANDOM19.78
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.020.010.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.661
r_dihedral_angle_4_deg19.876
r_dihedral_angle_3_deg13.439
r_dihedral_angle_1_deg5.531
r_scangle_it2.253
r_scbond_it1.487
r_angle_refined_deg1.167
r_mcangle_it0.859
r_mcbond_it0.605
r_nbtor_refined0.287
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.661
r_dihedral_angle_4_deg19.876
r_dihedral_angle_3_deg13.439
r_dihedral_angle_1_deg5.531
r_scangle_it2.253
r_scbond_it1.487
r_angle_refined_deg1.167
r_mcangle_it0.859
r_mcbond_it0.605
r_nbtor_refined0.287
r_symmetry_vdw_refined0.214
r_nbd_refined0.191
r_symmetry_hbond_refined0.143
r_xyhbond_nbd_refined0.118
r_chiral_restr0.074
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6968
Nucleic Acid Atoms
Solvent Atoms730
Heterogen Atoms288

Software

Software
Software NamePurpose
REFMACrefinement
CrystalCleardata reduction
PHASERphasing