☰ Navigation Tabs
Crystal structure of a monoclonal antibody directed against an antigenic determinant common to Ogawa and Inaba serotypes of Vibrio cholerae O1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other SET OF SEVERAL FAB STRUCTURES FROM THE WWPDB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 18% (V/V) OF PEG 4000, 0.1M NA CITRATE, 0.2 M MAGNESIUM SULFATE, PH 5.0
Crystal Properties Matthews coefficient Solvent content 2.5 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.06 α = 111.05 b = 75.225 β = 90.39 c = 98.409 γ = 106.83
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 45 97.5 0.05 17.6 2 64354
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 97.1 0.23 5.7 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT SET OF SEVERAL FAB STRUCTURES FROM THE WWPDB 2.5 91.29 61078 3275 97.5 0.213 0.211 0.2128 0.257 RANDOM 33.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 1.36 -0.39 0.31 -1 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.869 r_dihedral_angle_4_deg 23.237 r_dihedral_angle_3_deg 20.529 r_dihedral_angle_1_deg 7.133 r_scangle_it 3.395 r_scbond_it 2.271 r_angle_refined_deg 1.965 r_mcangle_it 1.174 r_mcbond_it 0.676 r_symmetry_vdw_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.869 r_dihedral_angle_4_deg 23.237 r_dihedral_angle_3_deg 20.529 r_dihedral_angle_1_deg 7.133 r_scangle_it 3.395 r_scbond_it 2.271 r_angle_refined_deg 1.965 r_mcangle_it 1.174 r_mcbond_it 0.676 r_symmetry_vdw_refined 0.317 r_symmetry_hbond_refined 0.317 r_nbtor_refined 0.316 r_nbd_refined 0.229 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.127 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13057 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing