2UXF

Pseudoazurin with engineered amicyanin ligand loop, oxidized form, pH 5.5


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.5HANGING DROP VAPOR DIFFUSION METHOD, 1 MICRO-L PROTEIN (20 MG/ML IN 100 MM MES, PH 5.5 PLUS 30 MM NACL) MIXED WITH 1 MICRO-L OF RESERVOIR SOLUTION (100 MM MES, PH 5.5 PLUS 2 M AMMONIUM SULFATE AND 2 M NACL)
Crystal Properties
Matthews coefficientSolvent content
2.1943.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 105.572α = 90
b = 105.572β = 90
c = 57.286γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHCONFOCAL MAXFLUX FROM OSMIC2006-12-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125098.60.0623.34.282742
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0794.40.196.33.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1BQK230789038398.70.1660.1640.204RANDOM38.78
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.59-0.8-1.592.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.553
r_dihedral_angle_3_deg14.833
r_dihedral_angle_4_deg13.532
r_dihedral_angle_1_deg6.427
r_scangle_it4.04
r_scbond_it2.598
r_angle_refined_deg1.541
r_mcangle_it1.541
r_mcbond_it1.072
r_symmetry_hbond_refined0.481
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.553
r_dihedral_angle_3_deg14.833
r_dihedral_angle_4_deg13.532
r_dihedral_angle_1_deg6.427
r_scangle_it4.04
r_scbond_it2.598
r_angle_refined_deg1.541
r_mcangle_it1.541
r_mcbond_it1.072
r_symmetry_hbond_refined0.481
r_nbtor_refined0.313
r_symmetry_vdw_refined0.219
r_nbd_refined0.201
r_xyhbond_nbd_refined0.196
r_chiral_restr0.113
r_bond_refined_d0.017
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms903
Nucleic Acid Atoms
Solvent Atoms83
Heterogen Atoms8

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing