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Crystal Structure of a CBS domain pair from the regulatory gamma1 subunit of human AMPK in complex with AMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 pH 8.00
Crystal Properties Matthews coefficient Solvent content 1.78 30.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.132 α = 90 b = 43.757 β = 118.83 c = 55.654 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.33 34.92 99 0.07 12.5 6.18 31832
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.33 1.38 90.7 0.4 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 1.33 34.92 29922 1595 99 0.171 0.169 0.207 RANDOM 11.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.2 0.11 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.674 r_dihedral_angle_4_deg 18.616 r_dihedral_angle_3_deg 13.669 r_dihedral_angle_1_deg 5.329 r_angle_refined_deg 1.494 r_angle_other_deg 0.92 r_nbd_refined 0.266 r_nbd_other 0.196 r_symmetry_vdw_other 0.194 r_nbtor_refined 0.187
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.674 r_dihedral_angle_4_deg 18.616 r_dihedral_angle_3_deg 13.669 r_dihedral_angle_1_deg 5.329 r_angle_refined_deg 1.494 r_angle_other_deg 0.92 r_nbd_refined 0.266 r_nbd_other 0.196 r_symmetry_vdw_other 0.194 r_nbtor_refined 0.187 r_scangle_it 0.176 r_xyhbond_nbd_refined 0.155 r_mcangle_it 0.144 r_symmetry_vdw_refined 0.134 r_symmetry_hbond_refined 0.133 r_scbond_it 0.126 r_mcbond_it 0.101 r_nbtor_other 0.085 r_chiral_restr 0.083 r_bond_refined_d 0.015 r_bond_other_d 0.012 r_gen_planes_refined 0.007 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1139 Nucleic Acid Atoms Solvent Atoms 251 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling CCP4 phasing