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Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.3 mM RNA (34-MER)-1, 0.26 mM [U-100% 13C; U-100% 15N] RNA (34-MER)-2 100% D2O 50 6.5 ambient 288 2 2D 1H-1H TOCSY 0.3 mM RNA (34-MER)-1, 0.26 mM [U-100% 13C; U-100% 15N] RNA (34-MER)-2 100% D2O 50 6.5 ambient 288 3 2D 1H-13C HSQC 0.3 mM RNA (34-MER)-1, 0.26 mM [U-100% 13C; U-100% 15N] RNA (34-MER)-2 100% D2O 50 6.5 ambient 288 4 2D 1H-13C HSQC 0.3 mM RNA (34-MER)-1, 0.26 mM [U-100% 13C; U-100% 15N] RNA (34-MER)-2 100% D2O 50 6.5 ambient 288 5 2D 1H-13C HSQC 0.18 mM [U-13C; U-15N]-Ade RNA (34-MER)-3, 0.19 mM [U-13C; U-15N]-Gua RNA (34-MER)-4 95% H2O/5% D2O 50 6.5 ambient 288 6 2D 1H-13C TROSY 0.3 mM RNA (34-MER)-1, 0.26 mM [U-100% 13C; U-100% 15N] RNA (34-MER)-2 100% D2O 50 6.5 ambient 288 7 2D 1H-13C TROSY 0.3 mM RNA (34-MER)-1, 0.26 mM [U-100% 13C; U-100% 15N] RNA (34-MER)-2 100% D2O 50 6.5 ambient 288
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker DRX 600 3 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 11 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 2.1 Bruker Biospin 2 processing TopSpin 2.1 Bruker Biospin 3 structure solution CNSSOLVE 1.3 Brunger, Adams, Clore, Gros, Nilges and Read 4 refinement CNSSOLVE 1.3 Brunger, Adams, Clore, Gros, Nilges and Read 5 peak picking Sparky 3.114 Goddard 6 grid search X-PLOR NIH 2.32 Schwieters, Kuszewski, Tjandra and Clore