2RRR

DNA oligomer containing ethylene cross-linked cyclic 2'-deoxyuridylate dimer


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY0.7mM Ethylene-DNA-1, 0.7mM Ethylene-DNA-2, 50mM sodium phosphate-3, 100mM sodium chloride-490% H2O/10% D2O6.8283
22D 1H-1H NOESY0.7mM Ethylene-DNA-5, 0.7mM Ethylene-DNA-6, 50mM sodium phosphate-7, 100mM sodium chloride-8100% D2O6.8283
32D 1H-1H TOCSY0.7mM Ethylene-DNA-1, 0.7mM Ethylene-DNA-2, 50mM sodium phosphate-3, 100mM sodium chloride-490% H2O/10% D2O6.8303
42D DQF-COSY0.7mM Ethylene-DNA-1, 0.7mM Ethylene-DNA-2, 50mM sodium phosphate-3, 100mM sodium chloride-490% H2O/10% D2O6.8303
52D 1H-13C HSQC0.7mM Ethylene-DNA-5, 0.7mM Ethylene-DNA-6, 50mM sodium phosphate-7, 100mM sodium chloride-8100% D2O6.8303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerDRX800
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number300
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2chemical shift assignmentSparkyGoddard
3structure solutionCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
4structure solutionMARDIGRASBrandan, A. Borgias, Paul D. Thomas, He Liu and Anil Kumar
5refinementCNS