2RRR
DNA oligomer containing ethylene cross-linked cyclic 2'-deoxyuridylate dimer
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.7mM Ethylene-DNA-1, 0.7mM Ethylene-DNA-2, 50mM sodium phosphate-3, 100mM sodium chloride-4 | 90% H2O/10% D2O | 6.8 | 283 | |||
2 | 2D 1H-1H NOESY | 0.7mM Ethylene-DNA-5, 0.7mM Ethylene-DNA-6, 50mM sodium phosphate-7, 100mM sodium chloride-8 | 100% D2O | 6.8 | 283 | |||
3 | 2D 1H-1H TOCSY | 0.7mM Ethylene-DNA-1, 0.7mM Ethylene-DNA-2, 50mM sodium phosphate-3, 100mM sodium chloride-4 | 90% H2O/10% D2O | 6.8 | 303 | |||
4 | 2D DQF-COSY | 0.7mM Ethylene-DNA-1, 0.7mM Ethylene-DNA-2, 50mM sodium phosphate-3, 100mM sodium chloride-4 | 90% H2O/10% D2O | 6.8 | 303 | |||
5 | 2D 1H-13C HSQC | 0.7mM Ethylene-DNA-5, 0.7mM Ethylene-DNA-6, 50mM sodium phosphate-7, 100mM sodium chloride-8 | 100% D2O | 6.8 | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | DRX | 800 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 300 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | chemical shift assignment | Sparky | Goddard | |
3 | structure solution | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
4 | structure solution | MARDIGRAS | Brandan, A. Borgias, Paul D. Thomas, He Liu and Anil Kumar | |
5 | refinement | CNS |