2RQ5

Solution structure of the AT-rich interaction domain (ARID) of Jumonji/JARID2


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.25-1.6 mM [U-15N] Jmj-ARID(615-730)-190% H2O/10% D2O906.4ambient288
22D 1H-15N HSQC0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
33D 1H-15N NOESY0.25-1.6 mM [U-15N] Jmj-ARID(615-730)-190% H2O/10% D2O906.4ambient288
43D HNHA0.25-1.6 mM [U-15N] Jmj-ARID(615-730)-190% H2O/10% D2O906.4ambient288
53D HNHB0.25-1.6 mM [U-15N] Jmj-ARID(615-730)-190% H2O/10% D2O906.4ambient288
62D 1H-13C HSQC0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
72D 1H-13C HSQC0.25-1.6 mM [U-10% 13C; U-15N] Jmj-ARID(615-730)-490% H2O/10% D2O906.4ambient288
83D HNCO0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
93D HCACO0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
103D HN(CO)CA0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
113D HNCA0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
123D CBCA(CO)NH0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
133D HNCACB0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
143D C(CO)NH0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
153D H(CCO)NH0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
163D HBHA(CO)NH0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
173D HCCH-TOCSY0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
183D HCCH-TOCSY0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-3100% D2O906.4ambient288
193D 1H-13C NOESY0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
203D 1H-13C NOESY0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-3100% D2O906.4ambient288
212D HBCBCGCDHD0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
222D HBCBCGCDCEHE0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-290% H2O/10% D2O906.4ambient288
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerAVANCE II700
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNS1.1Brunger, Adams, Clore, Gros, Nilges and Read
2collectionCYANA2.1Guntert, Mumenthaler and Wuthrich
3processingTopSpinBruker Biospin
4processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5data analysisSparkyGoddard
6data analysisPIPPGarrett