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Crystal structure of human XLF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 273 pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.37 48.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.46 α = 90 b = 86.95 β = 90 c = 91.91 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2007-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 0.9790 NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 100 0.166 11.4 13.7 18163 18163 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 99.9 0.43 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 25 3 18163 14110 1031 100 0.2952 0.25329 0.25083 0.2529 0.28674 0.2875 RANDOM 45.424
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.31 2.24 -0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.123 r_dihedral_angle_3_deg 18.213 r_dihedral_angle_4_deg 11.609 r_dihedral_angle_1_deg 6.315 r_scangle_it 3.951 r_scbond_it 2.642 r_angle_refined_deg 1.616 r_mcbond_it 1.53 r_mcangle_it 1.491 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.123 r_dihedral_angle_3_deg 18.213 r_dihedral_angle_4_deg 11.609 r_dihedral_angle_1_deg 6.315 r_scangle_it 3.951 r_scbond_it 2.642 r_angle_refined_deg 1.616 r_mcbond_it 1.53 r_mcangle_it 1.491 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.302 r_nbd_refined 0.265 r_symmetry_hbond_refined 0.225 r_xyhbond_nbd_refined 0.208 r_chiral_restr 0.112 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3462 Nucleic Acid Atoms Solvent Atoms 282 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CBASS data collection CrystalClear data reduction CrystalClear data scaling CNS phasing