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Structure of human CLIC2, crystal form A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K0M PDB ENTRY 1K0M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 293 35%-50% PEG 400, 100mM Tris-HCl, pH8.0, 5mM GSH, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.31 46.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.015 α = 90 b = 74.722 β = 90 c = 79.827 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.9 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 54.55 93.9 0.06 31.3 10.5 23149 23144
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 62 0.3 2.8 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1K0M 1.85 54.55 20592 1115 93.79 0.21665 0.21488 0.2276 0.25038 0.2581 RANDOM 33.893
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.71 0.2 2.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.644 r_dihedral_angle_4_deg 15.777 r_dihedral_angle_3_deg 15.027 r_dihedral_angle_1_deg 6.195 r_scangle_it 2.732 r_scbond_it 1.942 r_angle_refined_deg 1.538 r_angle_other_deg 1.162 r_mcangle_it 1.139 r_mcbond_it 0.921
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.644 r_dihedral_angle_4_deg 15.777 r_dihedral_angle_3_deg 15.027 r_dihedral_angle_1_deg 6.195 r_scangle_it 2.732 r_scbond_it 1.942 r_angle_refined_deg 1.538 r_angle_other_deg 1.162 r_mcangle_it 1.139 r_mcbond_it 0.921 r_symmetry_vdw_other 0.294 r_symmetry_vdw_refined 0.271 r_chiral_restr 0.218 r_nbd_refined 0.217 r_nbtor_refined 0.188 r_symmetry_hbond_refined 0.187 r_mcbond_other 0.184 r_nbd_other 0.176 r_xyhbond_nbd_refined 0.154 r_nbtor_other 0.086 r_xyhbond_nbd_other 0.018 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1835 Nucleic Acid Atoms Solvent Atoms 125 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing