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Structure of the C-terminal domain of sex pheromone staph-cAM373 precursor from Staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 291 15% Ethanol, 0.1M Tris-HCl pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.61 52.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.976 α = 90 b = 69.976 β = 90 c = 145.954 γ = 120
Symmetry Space Group P 32 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-07-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97932, 0.97943 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 90.2 0.087 8.2 8.8 29466 29466 -3 28.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 57 0.427 0.427 2.1 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 34.99 27918 27918 1499 90.25 0.18318 0.18318 0.18138 0.2062 0.21701 0.2321 RANDOM 41.548
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.2 -1.1 -2.2 3.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.903 r_dihedral_angle_4_deg 18.433 r_dihedral_angle_3_deg 13.159 r_dihedral_angle_1_deg 5.854 r_scangle_it 3.152 r_scbond_it 2.086 r_angle_refined_deg 1.301 r_mcangle_it 1.224 r_mcbond_it 0.81 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.903 r_dihedral_angle_4_deg 18.433 r_dihedral_angle_3_deg 13.159 r_dihedral_angle_1_deg 5.854 r_scangle_it 3.152 r_scbond_it 2.086 r_angle_refined_deg 1.301 r_mcangle_it 1.224 r_mcbond_it 0.81 r_nbtor_refined 0.302 r_nbd_refined 0.208 r_symmetry_hbond_refined 0.181 r_symmetry_vdw_refined 0.176 r_xyhbond_nbd_refined 0.134 r_chiral_restr 0.085 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2571 Nucleic Acid Atoms Solvent Atoms 338 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building