2QSW

Crystal structure of C-terminal domain of ABC transporter / ATP-binding protein from Enterococcus faecalis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.92770.01 M Zinc sulfate, 0.1 M MES buffer pH 6.9, 25% PEG 550 MME, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
1.8834.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.896α = 90
b = 38.896β = 90
c = 111.938γ = 90
Symmetry
Space GroupP 43 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDSBC-32007-07-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97920APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.526.899.40.06745.511.2144921449225.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5394.20.4382.484.5879

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.526.8137091370972899.410.1490.1490.14710.1842RANDOM14.295
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.230.23-0.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.786
r_dihedral_angle_4_deg25.781
r_dihedral_angle_3_deg13.215
r_sphericity_free6.392
r_dihedral_angle_1_deg5.666
r_scangle_it4.597
r_scbond_it3.18
r_sphericity_bonded2.745
r_mcangle_it2.107
r_rigid_bond_restr1.981
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.786
r_dihedral_angle_4_deg25.781
r_dihedral_angle_3_deg13.215
r_sphericity_free6.392
r_dihedral_angle_1_deg5.666
r_scangle_it4.597
r_scbond_it3.18
r_sphericity_bonded2.745
r_mcangle_it2.107
r_rigid_bond_restr1.981
r_mcbond_it1.743
r_angle_refined_deg1.704
r_angle_other_deg1.471
r_mcbond_other0.584
r_symmetry_hbond_refined0.312
r_symmetry_vdw_refined0.272
r_symmetry_vdw_other0.262
r_nbd_refined0.238
r_nbd_other0.212
r_chiral_restr0.195
r_xyhbond_nbd_refined0.182
r_nbtor_refined0.173
r_metal_ion_refined0.147
r_nbtor_other0.087
r_symmetry_metal_ion_refined0.087
r_bond_refined_d0.015
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms712
Nucleic Acid Atoms
Solvent Atoms102
Heterogen Atoms9

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
SHELXDphasing
MLPHAREphasing
DMphasing
SOLVEphasing
RESOLVEphasing
HKL-3000phasing