2PJS

Crystal structure of Atu1953, protein of unknown function


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52891M Na acetate, 50mM Cd sulfate, 0.21M Hepes pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
1.9135.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 29.847α = 90
b = 61.485β = 92.57
c = 54.383γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDCUSTOM-MADE2006-11-17MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97921, 0.97941, 0.97154APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.855099.70.07239.276.91688916839-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.871000.2556.646.6444

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.8527.17159721597285299.430.195930.195930.193610.238RANDOM26.527
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.58-0.86-0.48-2.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.616
r_dihedral_angle_4_deg23.507
r_dihedral_angle_3_deg13.123
r_dihedral_angle_1_deg8.184
r_scangle_it3.905
r_scbond_it2.538
r_angle_refined_deg1.579
r_mcangle_it1.574
r_mcbond_it1.251
r_nbtor_refined0.314
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.616
r_dihedral_angle_4_deg23.507
r_dihedral_angle_3_deg13.123
r_dihedral_angle_1_deg8.184
r_scangle_it3.905
r_scbond_it2.538
r_angle_refined_deg1.579
r_mcangle_it1.574
r_mcbond_it1.251
r_nbtor_refined0.314
r_symmetry_hbond_refined0.25
r_symmetry_vdw_refined0.213
r_nbd_refined0.205
r_xyhbond_nbd_refined0.167
r_chiral_restr0.112
r_bond_refined_d0.015
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1725
Nucleic Acid Atoms
Solvent Atoms104
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
autoSHARPphasing