2PBO

E27Q mutant of EXO-B-(1,3)-Glucanase from Candida Albicans at 1.85 A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.3293PEG 8000, Hepes, CaCl2, pH 7.3, temperature 293K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.0640.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60α = 90
b = 65.17β = 90
c = 96.69γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEMAR scanner 345 mm plate1998-11-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.83091.10.0413.43550632687
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.8691.60.1443241

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1EQP1.8516.443550630063123291.080.1310.130.158RANDOM14.537
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.452
r_dihedral_angle_4_deg17.273
r_dihedral_angle_3_deg11.466
r_dihedral_angle_1_deg5.801
r_scangle_it3.5
r_scbond_it2.279
r_mcangle_it1.448
r_angle_refined_deg1.231
r_angle_other_deg0.931
r_mcbond_it0.881
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.452
r_dihedral_angle_4_deg17.273
r_dihedral_angle_3_deg11.466
r_dihedral_angle_1_deg5.801
r_scangle_it3.5
r_scbond_it2.279
r_mcangle_it1.448
r_angle_refined_deg1.231
r_angle_other_deg0.931
r_mcbond_it0.881
r_symmetry_hbond_refined0.277
r_symmetry_vdw_other0.238
r_symmetry_vdw_refined0.234
r_nbd_refined0.21
r_mcbond_other0.209
r_nbd_other0.195
r_nbtor_refined0.186
r_xyhbond_nbd_refined0.174
r_nbtor_other0.088
r_chiral_restr0.081
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3229
Nucleic Acid Atoms
Solvent Atoms329
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
AMoREphasing