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Crystal structure of InlA Y369A/hEC1 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1O6S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 PEG 4000, CaCl2, Na-Acetate, Tris/MES, pH 6.0, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.06 40.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.323 α = 90 b = 84.741 β = 90 c = 108.416 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-01-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 1.05 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 40 99.4 0.045 20.8 67637
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 95.3 0.292 3207
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1O6S 1.6 40 67548 3432 99.38 0.155 0.153 0.159 0.186 RANDOM 11.235
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.34 -0.32
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.184 r_dihedral_angle_1_deg 3.928 r_scbond_it 3.362 r_mcangle_it 3.198 r_mcbond_it 2.239 r_angle_refined_deg 1.813 r_angle_other_deg 1.529 r_nbd_refined 0.164 r_nbd_other 0.164 r_symmetry_vdw_other 0.15
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.184 r_dihedral_angle_1_deg 3.928 r_scbond_it 3.362 r_mcangle_it 3.198 r_mcbond_it 2.239 r_angle_refined_deg 1.813 r_angle_other_deg 1.529 r_nbd_refined 0.164 r_nbd_other 0.164 r_symmetry_vdw_other 0.15 r_chiral_restr 0.133 r_symmetry_vdw_refined 0.087 r_symmetry_hbond_refined 0.074 r_xyhbond_nbd_refined 0.07 r_nbtor_other 0.066 r_bond_refined_d 0.022 r_bond_other_d 0.019 r_gen_planes_refined 0.015 r_gen_planes_other 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4323 Nucleic Acid Atoms Solvent Atoms 793 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling EPMR phasing REFMAC refinement PDB_EXTRACT data extraction