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Crystal structure of InlA S192N Y369S/mEC1 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1O6S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 298 PEG 6000, LiCl, Na-Citrate, pH 5.2, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.78 55.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.51 α = 90 b = 112.281 β = 101.53 c = 55.941 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.95 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 94.4 0.07 10.8 2.5 53338
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 85.1 0.327 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1O6S 1.85 110.43 50581 2728 93.88 0.16696 0.1647 0.1717 0.20744 RANDOM 21.488
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.24 0.89 -0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.862 r_dihedral_angle_4_deg 17.449 r_dihedral_angle_3_deg 12.962 r_dihedral_angle_1_deg 5.207 r_scangle_it 3.659 r_mcangle_it 2.703 r_scbond_it 2.6 r_mcbond_it 2.103 r_angle_refined_deg 1.707 r_nbtor_refined 0.285
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.862 r_dihedral_angle_4_deg 17.449 r_dihedral_angle_3_deg 12.962 r_dihedral_angle_1_deg 5.207 r_scangle_it 3.659 r_mcangle_it 2.703 r_scbond_it 2.6 r_mcbond_it 2.103 r_angle_refined_deg 1.707 r_nbtor_refined 0.285 r_metal_ion_refined 0.252 r_nbd_refined 0.176 r_symmetry_vdw_refined 0.158 r_xyhbond_nbd_refined 0.122 r_symmetry_hbond_refined 0.113 r_chiral_restr 0.103 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4309 Nucleic Acid Atoms Solvent Atoms 882 Heterogen Atoms 5
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling EPMR phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling