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Structure of oxidized beta-actin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1J6Z PDB ENTRY 1J6Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 1.6 M (NH4)2SO4, 0.1 M HEPES, 0.1 M NaCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.65 53.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.174 α = 90 b = 222.589 β = 90 c = 133.719 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Mirrors 2006-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 33.98 94.7 0.129 0.129 9.34 3.6 52031 52031 -3 39
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.68 76.4 0.646 0.646 1.72 2.7 3616
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1J6Z 2.606 33.98 50920 48371 2548 100 0.21383 0.21383 0.20991 0.2084 0.28812 0.2825 RANDOM 38.128
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.95 -2.01 -3.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.387 r_dihedral_angle_3_deg 17.186 r_dihedral_angle_4_deg 16.196 r_dihedral_angle_1_deg 5.333 r_scangle_it 1.701 r_angle_refined_deg 1.389 r_scbond_it 1.07 r_mcangle_it 0.553 r_mcbond_it 0.328 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.387 r_dihedral_angle_3_deg 17.186 r_dihedral_angle_4_deg 16.196 r_dihedral_angle_1_deg 5.333 r_scangle_it 1.701 r_angle_refined_deg 1.389 r_scbond_it 1.07 r_mcangle_it 0.553 r_mcbond_it 0.328 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.207 r_symmetry_hbond_refined 0.191 r_xyhbond_nbd_refined 0.17 r_metal_ion_refined 0.133 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11024 Nucleic Acid Atoms Solvent Atoms 502 Heterogen Atoms 153
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data reduction XSCALE data scaling PHASER phasing