2NT4

Receiver domain from Myxococcus xanthus social motility protein FrzS (H92F mutant)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.5291100mM Bis-Tris pH 5.5, 25% PEG 3350, 20% MPD added before freezing, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
1.9436.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.883α = 90
b = 37.119β = 102.49
c = 42.104γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102006-03-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.1ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.022096.70.0430.04314.33.551807518076.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.021.0882.40.3270.32722.26553

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 2gkg1.02205177851778262596.620.12410.12410.122530.1539RANDOM8.627
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.07-0.37-0.05-0.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.996
r_dihedral_angle_4_deg14.626
r_dihedral_angle_3_deg10.535
r_dihedral_angle_1_deg6.489
r_sphericity_free5.938
r_scangle_it4.325
r_scbond_it3.156
r_sphericity_bonded2.697
r_mcangle_it2.017
r_mcbond_it1.654
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.996
r_dihedral_angle_4_deg14.626
r_dihedral_angle_3_deg10.535
r_dihedral_angle_1_deg6.489
r_sphericity_free5.938
r_scangle_it4.325
r_scbond_it3.156
r_sphericity_bonded2.697
r_mcangle_it2.017
r_mcbond_it1.654
r_angle_refined_deg1.539
r_rigid_bond_restr1.457
r_angle_other_deg0.849
r_mcbond_other0.524
r_symmetry_vdw_other0.311
r_nbd_refined0.239
r_symmetry_vdw_refined0.225
r_symmetry_hbond_refined0.218
r_nbd_other0.186
r_nbtor_refined0.17
r_xyhbond_nbd_refined0.156
r_symmetry_hbond_other0.152
r_chiral_restr0.096
r_nbtor_other0.082
r_bond_refined_d0.012
r_gen_planes_refined0.008
r_bond_other_d0.004
r_gen_planes_other0.003
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms958
Nucleic Acid Atoms
Solvent Atoms246
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing