2NLW
Solution structure of the RRM domain of human eukaryotic initiation factor 3b
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 0.8mM eIF3b-RRM unlabeled, 20mM HEPES, 90% H2O, 10% D2O | 90% H2O/10% D2O | 300mM | 7.5 | ambient | 298 | |
2 | 3D_15N-separated_NOESY | 0.8mM eIF3b-RRM U-15N, 20mM HEPES, 90% H2O, 10% D2O | 90% H2O/10% D2O | 300mM | 7.5 | ambient | 298 | |
3 | 3D_13C-separated_NOESY | 0.8mM eIF3b-RRM U-15N,13C, 20mM HEPES, 90% H2O, 10% D2O | 90% H2O/10% D2O | 300mM | 7.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 500 |
2 | Bruker | DMX | 600 |
3 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, refinement by restrained molecular dynamics in a hydrated environment | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 16 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.5 | Bruker |
2 | processing | XwinNMR | 3.5 | Bruker |
3 | data analysis | Sparky | 3.98 | Goddard/Kneller |
4 | structure solution | CYANA | 2.1 | Guntert, P |
5 | refinement | CNS | 1.1 | Brunger |