2NBC
Resonance assignments and structure determination of poneritoxin, omega-PONTX-Ae1a, from Anochetus emarginatus
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 2 mM omega-PONTX-Ae1a, 2 mM AMINO GROUP, 5 % D2O, 20 mM sodium phosphate | 95% H2O/5% D2O | 20 | 6 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 2 mM omega-PONTX-Ae1a, 2 mM AMINO GROUP, 5 % D2O, 20 mM sodium phosphate | 95% H2O/5% D2O | 20 | 6 | ambient | 298 | |
3 | 2D 1H-1H TOCSY | 2 mM omega-PONTX-Ae1a, 2 mM AMINO GROUP, 5 % D2O, 20 mM sodium phosphate | 95% H2O/5% D2O | 20 | 6 | ambient | 298 | |
4 | 2D 1H-1H NOESY | 2 mM omega-PONTX-Ae1a, 2 mM AMINO GROUP, 5 % D2O, 20 mM sodium phosphate | 95% H2O/5% D2O | 20 | 6 | ambient | 298 | |
5 | 2D 1H-1H NOESY | 2 mM omega-PONTX-Ae1a, 2 mM AMINO GROUP, 100 % D2O, 20 mM sodium phosphate | 100% D2O | 20 | 6 | ambient | 298 | |
6 | 2D 1H-13C HSQC | 2 mM omega-PONTX-Ae1a, 2 mM AMINO GROUP, 100 % D2O, 20 mM sodium phosphate | 100% D2O | 20 | 6 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | Avance | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | TOPSPIN |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | Best stereochemical property judged by Molprobity |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TOPSPIN | Bruker Biospin | |
2 | processing | TOPSPIN | Bruker Biospin | |
3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | peak picking | CcpNmr_Analysis | CCPN | |
5 | chemical shift assignment | CcpNmr_Analysis | CCPN | |
6 | dihedral angle prediction | TALOS | Cornilescu, Delaglio and Bax | |
7 | refinement | CYANA |