2MDA | pdb_00002mda

The Solution Structure of the Regulatory Domain of Tyrosine Hydroxylase

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.8 mM [U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
2	2D 1H-15N HSQC	1.0-1.2 mM [U-95% 13C; U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
3	2D 1H-13C HSQC	1.0-1.2 mM [U-95% 13C; U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
4	3D CBCA(CO)NH	1.0-1.2 mM [U-95% 13C; U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
5	3D C(CO)NH	1.0-1.2 mM [U-95% 13C; U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
6	3D HNCO	1.0-1.2 mM [U-95% 13C; U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
7	3D HNCA	1.0-1.2 mM [U-95% 13C; U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
8	3D HNCACB	1.0-1.2 mM [U-95% 13C; U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
9	3D HBHA(CO)NH	1.0-1.2 mM [U-95% 13C; U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
10	3D HN(CO)CA	1.0-1.2 mM [U-95% 13C; U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
11	3D H(CCO)NH	1.0-1.2 mM [U-95% 13C; U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
12	3D HCCH-TOCSY	1.0-1.2 mM [U-95% 13C; U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
13	3D HNHA	1.0-1.2 mM [U-95% 13C; U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
14	3D 1H-15N NOESY	0.8 mM [U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
15	3D 1H-15N NOESY	0.9 mM RDTyrH65, 0.9 mM [U-2H;U-15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
16	3D 1H-13C NOESY	1.0-1.2 mM [U-95% 13C; U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
17	2D IPAP-HSQC	0.8 mM [U-95% 15N] RDTyrH65, 50 mM sodium phosphate, 8 mg/mL Pf1 phage	95% H2O/5% D2O	0.11	7.0	ambient	300
18	T1	0.8 mM [U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
19	T2	0.8 mM [U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300
20	Relax_NOE	0.8 mM [U-95% 15N] RDTyrH65, 50 mM sodium phosphate	95% H2O/5% D2O	0.11	7.0	ambient	300

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	700
2	Bruker	AVANCE	600
3	Bruker	AVANCE	500

NMR Refinement
Method	Details	Software
simulated annealing		ARIA

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	ARIA		Linge, O'Donoghue and Nilges
2	data analysis	ModelFree		Palmer
3	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	chemical shift assignment	NMRView		Johnson, One Moon Scientific
6	peak picking	NMRView		Johnson, One Moon Scientific
7	data analysis	NMRView		Johnson, One Moon Scientific
8	chemical shift calculation	PECAN		Eghbalnia, Wang, Bahrami, Assadi, and Markley
9	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
10	data analysis	ProcheckNMR		Laskowski and MacArthur
11	data analysis	TALOS		Cornilescu, Delaglio and Bax
12	collection	TopSpin		Bruker Biospin