2MB2
parallel-stranded G-quadruplex in DNA poly-G stretches
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 0.1-2 mM DNA (5'-D(*TP*TP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*T)-3') | 90% H2O/10% D2O | 10 | 7.0 | ambient | 310 | |
2 | 2D 1H-1H NOESY | 0.1-2 mM DNA (5'-D(*TP*TP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*T)-3') | 90% H2O/10% D2O | 10 | 7.0 | ambient | 310 | |
3 | 2D 1H-1H JRNOESY | 0.1-2 mM DNA (5'-D(*TP*TP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*T)-3') | 90% H2O/10% D2O | 10 | 7.0 | ambient | 310 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 700 |
2 | Bruker | AMX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing, simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | geometry optimization | X-PLOR NIH | 2.34 | Schwieters, Kuszewski, Tjandra and Clore |
2 | refinement | X-PLOR NIH | 2.34 | Schwieters, Kuszewski, Tjandra and Clore |
3 | structure solution | X-PLOR NIH | 2.34 | Schwieters, Kuszewski, Tjandra and Clore |