2M6T | pdb_00002m6t

NMR solution structure ensemble of 3-4D mutant domain 11 IGF2R

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	ambient	310
2	2D 1H-13C HSQC	1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	ambient	310
3	3D CBCA(CO)NH	1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	ambient	310
4	3D C(CO)NH	1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	ambient	310
5	3D HNCO	1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	ambient	310
6	3D HNCA	1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	ambient	310
7	3D HN(CO)CA	1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	ambient	310
8	3D H(CCO)NH	1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	ambient	310
9	3D HCCH-TOCSY	1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	ambient	310
10	3D 1H-15N NOESY	1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	ambient	310
11	3D 1H-15N TOCSY	1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	ambient	310
12	3D 1H-13C NOESY aliphatic	1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	ambient	310
13	Heteronuclear NOE ratio	1 mM [U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	1 atm	298
14	Heteronuclear NOE ratio	1 mM [U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	1 atm	298
15	T1 experiments	1 mM [U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	1 atm	298
16	T1 experiments	1 mM [U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	1 atm	298
17	T2 experiments	1 mM [U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	1 atm	298
18	T2 experiments	1 mM [U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	1 atm	298
19	3D 1H-13C NOESY aromatic	1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate	93% H2O/7% D2O		5.5	ambient	310

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	VNMRS	600
2	Varian	VNMRS	900

NMR Refinement
Method	Details	Software
DGSA-distance geometry simulated annealing		ARIA

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	250
Conformers Submitted Total Number	20
Representative Model	1 (fewest violations)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	ARIA	2.2	Linge, O'Donoghue and Nilges
2	refinement	ARIA	2.2	Linge, O'Donoghue and Nilges
3	structure solution	ARIA	2.2	Linge, O'Donoghue and Nilges
4	refinement	CING	iCing	Doreleijers
5	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7	data analysis	relax	1.3.9	Palmer
8	processing	relax	1.3.9	Palmer
9	data analysis	Sparky	2.6	Goddard
10	collection	VnmrJ	0.4	Varian
11	chemical shift assignment	CCPN_Analysis	2.1	CCPN
12	data analysis	CCPN_Analysis	2.1	CCPN
13	peak picking	CCPN_Analysis	2.1	CCPN
14	geometry optimization	TALOS	TALOS+	Cornilescu, Delaglio and Bax