2M6T

NMR solution structure ensemble of 3-4D mutant domain 11 IGF2R


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.5ambient310
22D 1H-13C HSQC1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.5ambient310
33D CBCA(CO)NH1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.5ambient310
43D C(CO)NH1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.5ambient310
53D HNCO1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.5ambient310
63D HNCA1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.5ambient310
73D HN(CO)CA1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.5ambient310
83D H(CCO)NH1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.5ambient310
93D HCCH-TOCSY1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.5ambient310
103D 1H-15N NOESY1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.5ambient310
113D 1H-15N TOCSY1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.5ambient310
123D 1H-13C NOESY aliphatic1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.5ambient310
13Heteronuclear NOE ratio1 mM [U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.51 atm298
14Heteronuclear NOE ratio1 mM [U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.51 atm298
15T1 experiments1 mM [U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.51 atm298
16T1 experiments1 mM [U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.51 atm298
17T2 experiments1 mM [U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.51 atm298
18T2 experiments1 mM [U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.51 atm298
193D 1H-13C NOESY aromatic1 mM [U-95% 13C; U-95% 15N] Domain 11, 7 % [U-2H] D2O, 93 % H2O, 100 uM sodium azide, 1 mM EDTA, 10 mM sodium acetate93% H2O/7% D2O5.5ambient310
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianVNMRS600
2VarianVNMRS900
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number250
Conformers Submitted Total Number20
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingARIA2.2Linge, O'Donoghue and Nilges
2refinementARIA2.2Linge, O'Donoghue and Nilges
3structure solutionARIA2.2Linge, O'Donoghue and Nilges
4refinementCINGiCingDoreleijers
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7data analysisRelax1.3.9Palmer
8processingRelax1.3.9Palmer
9data analysisSPARKY2.6Goddard
10collectionVNMRJ0.4Varian
11chemical shift assignmentCCPN_Analysis2.1CCPN
12data analysisCCPN_Analysis2.1CCPN
13peak pickingCCPN_Analysis2.1CCPN
14geometry optimizationTALOSTALOS+Cornilescu, Delaglio and Bax