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NMR Solution Structure of the La motif (N-terminal Domain, NTD) of Dictyostelium discoideum La protein
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.37 mM [U-98% 15N] La-type RNA-binding domain, 50 mM buffer salts 90% H2O/10% D2O 50 7.0 1 atm 298 2 2D 1H-15N HSQC 0.37 mM [U-98% 13C; U-98% 15N] La-type RNA-binding domain, 50 mM buffer salts 90% H2O/10% D2O 50 7.0 1 atm 298 3 3D CBCA(CO)NH 0.37 mM [U-98% 13C; U-98% 15N] La-type RNA-binding domain, 50 mM buffer salts 90% H2O/10% D2O 50 7.0 1 atm 298 4 3D HNCO 0.37 mM [U-98% 13C; U-98% 15N] La-type RNA-binding domain, 50 mM buffer salts 90% H2O/10% D2O 50 7.0 1 atm 298 5 3D HNCA 0.37 mM [U-98% 13C; U-98% 15N] La-type RNA-binding domain, 50 mM buffer salts 90% H2O/10% D2O 50 7.0 1 atm 298 6 3D HNCACB 0.37 mM [U-98% 13C; U-98% 15N] La-type RNA-binding domain, 50 mM buffer salts 90% H2O/10% D2O 50 7.0 1 atm 298 7 3D HN(CO)CA 0.37 mM [U-98% 13C; U-98% 15N] La-type RNA-binding domain, 50 mM buffer salts 90% H2O/10% D2O 50 7.0 1 atm 298 8 3D HCCH-TOCSY 0.37 mM [U-98% 13C; U-98% 15N] La-type RNA-binding domain, 50 mM buffer salts 90% H2O/10% D2O 50 7.0 1 atm 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker DPX 400
NMR Refinement Method Details Software molecular dynamics, restrained energy minimization CARA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 31 Conformers Submitted Total Number 31 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CARA 1.8.4 Keller and Wuthrich 2 refinement AMBER_5.0 Case, D.A. et al.