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Solution-state NMR structure of prion protein mutant V210I at neutral pH
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.6 mM [U-100% 13C; U-100% 15N] prion protein mutation V210I 90% H2O/10% D2O 20 mM 7.2 ambient 298 2 2D 1H-15N HSQC NH2 only 0.6 mM [U-100% 13C; U-100% 15N] prion protein mutation V210I 90% H2O/10% D2O 20 mM 7.2 ambient 298 3 2D 1H-13C HSQC aliphatic 0.6 mM [U-100% 13C; U-100% 15N] prion protein mutation V210I 90% H2O/10% D2O 20 mM 7.2 ambient 298 4 2D 1H-13C HSQC aromatic 0.6 mM [U-100% 13C; U-100% 15N] prion protein mutation V210I 90% H2O/10% D2O 20 mM 7.2 ambient 298 5 3D 1H-13C NOESY aliphatic 0.6 mM [U-100% 13C; U-100% 15N] prion protein mutation V210I 90% H2O/10% D2O 20 mM 7.2 ambient 298 6 3D CBCA(CO)NH 0.6 mM [U-100% 13C; U-100% 15N] prion protein mutation V210I 90% H2O/10% D2O 20 mM 7.2 ambient 298 7 3D C(CO)NH 0.6 mM [U-100% 13C; U-100% 15N] prion protein mutation V210I 90% H2O/10% D2O 20 mM 7.2 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian VNMRS 800
NMR Refinement Method Details Software molecular dynamics, simulated annealing THE FINAL STEP OF STRUCTURE REFINEMENT WAS PERFORMED IN EXPLICIT WATER-BOX, USED FOR AUTOMATED NMR PROTEIN STRUCTURE CALCULATION CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 20 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA 3.0 Guntert, Mumenthaler and Wuthrich 2 geometry optimization YASARA Elmar Krieger 3 refinement YASARA Elmar Krieger 4 refinement CYANA 3.0 Guntert, Mumenthaler and Wuthrich