Solution Structure of Cytotoxic T-Lymphocyte Antigent-2(Ctla protein), Crammer at pH 6.0
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.3 mM [U-99% 15N] CRAMMER-1, 10 mM Citric-acid phosphate-2 | 90% H2O/10% D2O | 6 | ambient | 298 | ||
| 2 | 2D DQF-COSY | 0.5 mM CRAMMER-5, 10 mM Citric-acid phosphate-6 | 10mM citric-acid phosphate | 6 | ambient | 298 | ||
| 3 | 2D 1H-1H COSY | 0.5 mM CRAMMER-5, 10 mM Citric-acid phosphate-6 | 10mM citric-acid phosphate | 6 | ambient | 298 | ||
| 4 | 2D 1H-1H NOESY | 0.5 mM CRAMMER-5, 10 mM Citric-acid phosphate-6 | 10mM citric-acid phosphate | 6 | ambient | 298 | ||
| 5 | 3D CBCA(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] CRAMMER-3, 10 mM Citric-acid phosphate-4 | 90% H2O/10% D2O | 6 | ambient | 298 | ||
| 6 | 3D HNCO | 0.5 mM [U-99% 13C; U-99% 15N] CRAMMER-3, 10 mM Citric-acid phosphate-4 | 90% H2O/10% D2O | 6 | ambient | 298 | ||
| 7 | 3D HNCA | 0.5 mM [U-99% 13C; U-99% 15N] CRAMMER-3, 10 mM Citric-acid phosphate-4 | 90% H2O/10% D2O | 6 | ambient | 298 | ||
| 8 | 3D HNCACB | 0.5 mM [U-99% 13C; U-99% 15N] CRAMMER-3, 10 mM Citric-acid phosphate-4 | 90% H2O/10% D2O | 6 | ambient | 298 | ||
| 9 | 3D HBHA(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] CRAMMER-3, 10 mM Citric-acid phosphate-4 | 90% H2O/10% D2O | 6 | ambient | 298 | ||
| 10 | 3D HN(CO)CA | 0.5 mM [U-99% 13C; U-99% 15N] CRAMMER-3, 10 mM Citric-acid phosphate-4 | 90% H2O/10% D2O | 6 | ambient | 298 | ||
| 11 | 3D 1H-15N NOESY | 0.5 mM [U-99% 13C; U-99% 15N] CRAMMER-3, 10 mM Citric-acid phosphate-4 | 90% H2O/10% D2O | 6 | ambient | 298 | ||
| 12 | 3D 1H-15N TOCSY | 0.5 mM [U-99% 13C; U-99% 15N] CRAMMER-3, 10 mM Citric-acid phosphate-4 | 90% H2O/10% D2O | 6 | ambient | 298 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AMX | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| SIMULATED ANNEALING, MOLECULAR DYNAMICS | CNS | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 500 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CNS | 1.1 | BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN |
| 2 | data analysis | CNS | 1.1 | BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN |
| 3 | structure solution | Sparky | Goddard | |
| 4 | chemical shift assignment | Sparky | Goddard | |
| 5 | chemical shift calculation | Sparky | Goddard | |
| 6 | peak picking | Sparky | Goddard | |
| 7 | structure solution | PSVS | Bhattacharya and Montelione | |
| 8 | data analysis | PSVS | Bhattacharya and Montelione | |
| 9 | structure solution | MOLMOL | Koradi, Billeter and Wuthrich | |
| 10 | collection | MOLMOL | Koradi, Billeter and Wuthrich | |
| 11 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich | |














