Signaling state of Photoactive Yellow Protein
SOLUTION NMR - SOLUTION SCATTERING
| Solution Scattering Data Acquistion | 1 |
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| Scattering Type | x-ray |
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| Radiation/Neutron Source | ESRF |
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| Synchrotron | Y |
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| Beamline Type | ID09B |
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| Detector Type | CCD |
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| Detector Manufacturer Details | Mar133: MAR RESEARCH |
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| Temperature (K) | 293 |
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| pH | 7 |
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| Numer of Time Frames Used | |
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| Protein Concentration Range (mg/mL) | 64 |
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| Sample Buffer | 20 MM NACL |
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| Data Reduction Software | |
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| Guiner Mean Radius Of Gyration (nm) | 1.46 |
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| Sigma Mean Radius Of Gyration | |
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| R(XS-1) Mean Cross Sectional Radii (nm) | |
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| R(XS-1) Sigma Mean Cross Sectional Radii | |
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| R(XS-2) Mean Cross Sectional Radii (nm) | |
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| R(XS-2) Sigma Mean Cross Sectional Radii | |
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| P(R) Protein Length (nm) | |
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| Solution Scattering Data Analysis and Model Fitting |
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| Method | Software | Software Authors | Starting Model | Conformers, Number Calculated | Conformers, Number Submitted | Conformers, Selection Criteria | Best Representative Conformer | Other Details |
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| CNS (NIH SAXS version) | Grishaev, Wu, Trewhella, Bax, Brunger, Adams, Clore, Delano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren | | 15 | 14 | STRUCTUREs WITH THE LEAST RESTRAINT VIOLATIONS | 1 | |
| NMR Experiment |
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| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
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| 1 | 2D 1H-15N HSQC | 75 uM PYP, 50 mM potassium phosphate | 95% H2O/5% D2O | 0 | 5.75 | ambient | 298 | |
| NMR Spectrometer Information |
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| Spectrometer | Manufacturer | Model | Field Strength |
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| 1 | Bruker | AVANCE II | 500 |
| NMR Refinement |
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| Method | Details | Software |
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| simulated annealing | | CNS |
| NMR Ensemble Information |
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| Conformer Selection Criteria | structures with the least restraint violations |
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| Conformers Calculated Total Number | 15 |
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| Conformers Submitted Total Number | 14 |
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| Representative Model | 1 (lowest energy) |
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| Computation: NMR Software |
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| # | Classification | Version | Software Name | Author |
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| 1 | structure solution | CNS | | Brunger, Adams, Clore, Gros, Nilges and Read |
| 2 | data analysis | DEERANALYSIS2006 | | Gunnar Jeschke |
| 3 | refinement | CNS | | Brunger, Adams, Clore, Gros, Nilges and Read |
